Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015938343.1_cds_XP_016483270.1_74406
CDS Infomation

[gene=LOC107803983] [db_xref=GeneID:107803983] [protein=pentatricopeptide repeat-containing protein At1g30610, chloroplastic-like] [protein_id=XP_016483270.1] [location=complement(join(63703..64074,64518..64949,65979..66136,66216..66306,71215..71328,72085..72276,72403..72484,73072..73263,73446..74065))] [gbkey=CDS]
Sequence

ATGGTGGCAATTATCTTGACAGAAGCTCTATTTGGAGCTTCTTCTTCTTGTACTGATTTC
AATGGAGTTTTTGGTTCAAATTACCTCCGTTGCCCTTGTTTTTCATCAAGATTTTCTCTT
TCTGATACACCCTTTTCGGAAATTTCTCTAGGTAACAAAAGGGTGAAGAAGCAGAAGAGA
ATTCTGGGTGTTGGCATACTTTCTTGTAGCTTAGGTAATGGGATAGTTGATAAAGAAGAG
CTTGAATTCAAGCCTTCATTTGATGAGTATTTGAAAGCCATGGAGTCTTTAAAGGAAAAG
AAAAAGAGTGATAGTGTTATTAGAAGAAAGAAAGGCGAAGAAGAAAAGGGTAAATTTGGG
AAGTCTGTGGTGAAGAAATGTGTAGAAAGTTCTGATGTTGTGGAGAAACGTGAAGGAGTT
GGAGCTGTGGAAGAAAAGGGTAGTGGTGGGAAATTGGAATTTAGAAAGGTGGTGATTGAG
AAAAGAGAGAGCATAAGTAAAGCAAAGCATGTTGATGAGATGGACAGAGCTGCTTTTAAG
TCGATGGATGATGATGCTTATGATAAGCCAAGAGTTACTAAGGCAGACATGGAACAGAGA
ATCCAAAGGCTTGCAAAGTGTCTAAATGGTGCAGACATTGACATGCCTGAGTGGATGTTC
TCTAAAATGATGCGAAGTGCTCAGATTAGATTCTCTGATCACTCTATCTTGAGGATTATC
CAAATATTGGGTAGATTGGGAAATTGGAGACGGGTGCTGCAAGTCATTGAGTGGCTTTGT
TCACGTGAACGCTTCAAGTCACACAAGTTAAGATATATTTACACGGCTGCACTGGATGCA
TTGGGGAAGGCGAGGAGGCCAGTGGAAGCACTAAACTTGTTTCGTGCAATGCAGGAACAC
ATATCATCGTATCCAGACCTTGTGGCTTACCATTGTATTGCTGTCACTCTTGGACAAGCA
GGACATATGAAGGAACTTTTTGACGTCATCGATACCATGCAATCACCACCCAAAAAGAAA
TTCAAGACTAATATTATTGAGAAGTTTGATCCACGACTTGAGCCGGATGTTGTCATCTAT
AACGCTGTGCTAAATGCCTGTGGTCGCCGTAAAAGCTGGGAGGGTGCCTTTTGGGTGCTA
CAACAGTTAAAGCTCCGGGACCAGCAGCCTTCAGTAACAACATATGGATTAGTCATGGAG
GTTATGTTCGAATGTGGCAAATACAATTTGGTGCATGACTTTTTCAAGAAAATGCAGAAG
TCATGTATTCCCAATGCTTTAACCTATAAAGTTCTTGTGAGTACTCTTTGGAAGGAAGGA
AAAACAGACGAGGCCATATTGGCTGTAGAAGATATGGAAAGACGAGGAATCGTGGGCACT
GCCAGTTTGTATTATGACCTTGCTCGTTGCCTTTGTAGTGCGGGGAGGTGTGAAGAGGCT
CTGATGCAAATGGAAAAAATATGCAAAGTTGCTTCCAAGCCTCTAGTGGTGACTTATACT
GGTCTACTTCAAGCTTGTCTGGACTCTGGTGACGTTCAGAGTGGAGTATACATCTTTAAC
CAAATGAACCAGTTTTGCTCCCCAAATTTGGTAACTTACAATATAATGCTAAAAGCTTAT
CTGGATAATGGGATGTTTGAAGAAGCAAGGCAGTTATTTTTCAAGTTATTGGATAATGGT
AACCATATTAGCAGTAAATTGGACAGTAAGGATAAGGTTTTACCAGATGTCTACACATTC
AACTTAATGTTGGATGCATACGCTGCTGAGAAAAAGTGGGATGATCTCGGGTTTACCTAC
TCCCGTATGCTGAAATATGGATACCATTTCAATCCAAAACGTCACATTCAGATAGTACTT
GACTCCTGCAGTGCTGGAAAGGTGGAATTATTAGAAGCAACTTGGAAGGACTTGGCTCAG
GCTGATCGGGTTCCACCAGTGCCACTAGTCAAAGAAATGTTCCGTGTGCAGCTGGGGAGA
GGCAATTTTTCCACTGCCCTGGCTTGTCTTGCTGATTATCCTTCCTCTGAATCACAGGCA
TTTTCTGCCAGGTTTTGGATGAAATTTTTCTTGGAAAATTCTGATCGATTATCAGATGGT
ACTCTTTTCAGATTGCTACAAGAGGTGAGCCCTGTCGTTGCCACAAAGGACAGCAGAATA
CTTAACAATCTGATGGCTTCTTGTAAAGAGTTTTTAAGAACTCGATCAGCAAAACTTGAC
AGAGTTCATAGCGAAACAGCTTTAGTTTGTTAA

Peptide Sequence

PEP ID

XP_016483270.1
PEP Infomation

PREDICTED: pentatricopeptide repeat-containing protein At1g30610, chloroplastic-like [Nicotiana tabacum]
Sequence

MVAIILTEALFGASSSCTDFNGVFGSNYLRCPCFSSRFSLSDTPFSEISLGNKRVKKQKR
ILGVGILSCSLGNGIVDKEELEFKPSFDEYLKAMESLKEKKKSDSVIRRKKGEEEKGKFG
KSVVKKCVESSDVVEKREGVGAVEEKGSGGKLEFRKVVIEKRESISKAKHVDEMDRAAFK
SMDDDAYDKPRVTKADMEQRIQRLAKCLNGADIDMPEWMFSKMMRSAQIRFSDHSILRII
QILGRLGNWRRVLQVIEWLCSRERFKSHKLRYIYTAALDALGKARRPVEALNLFRAMQEH
ISSYPDLVAYHCIAVTLGQAGHMKELFDVIDTMQSPPKKKFKTNIIEKFDPRLEPDVVIY
NAVLNACGRRKSWEGAFWVLQQLKLRDQQPSVTTYGLVMEVMFECGKYNLVHDFFKKMQK
SCIPNALTYKVLVSTLWKEGKTDEAILAVEDMERRGIVGTASLYYDLARCLCSAGRCEEA
LMQMEKICKVASKPLVVTYTGLLQACLDSGDVQSGVYIFNQMNQFCSPNLVTYNIMLKAY
LDNGMFEEARQLFFKLLDNGNHISSKLDSKDKVLPDVYTFNLMLDAYAAEKKWDDLGFTY
SRMLKYGYHFNPKRHIQIVLDSCSAGKVELLEATWKDLAQADRVPPVPLVKEMFRVQLGR
GNFSTALACLADYPSSESQAFSARFWMKFFLENSDRLSDGTLFRLLQEVSPVVATKDSRI
LNNLMASCKEFLRTRSAKLDRVHSETALVC

Transcript Sequence

Gene sequence data has not been registered.